Nodes configuration

Synthesis

  • Total number of Cores: 1368
  • Total available storage space: 30 TB
  • 4 GPUs, 480 CUDA Cores, 2 TFlops

Eon cluster:

Computing infrastructure

20 nodes:
DELL PowerEdge LAME BLADE 1955
2 Intel Xeon E5335 2.0 Ghz quad core 2×4 Mo
16GB 667MHZ FBD
2 hdd 73Go SAS 15Krpm

Operating system

Linux fedora Core 7
Kernel 2.6.23.17-88

compilers and libraries

  • gcc 4.1.2
  • glibc 2.6-4
  • Python 2.5
  • Perl 5.8.8
  • Fortran 4.1.2
  • R 2.7.0-5
  • TCL 8.4

available softs

  • Matlab 2007
  • Blender 2.46

Any required library and soft can be installed on these nodes on your demand.

Storage server:

Dell PowerEdge P2950
2 Intel Xeon E5345 2.33 Ghz quad core 2×4 Mo
6×500Go SATA 7.2Krpm RAID0

Windows CCS cluster:

8 nodes :
HP ProLiant BL460c
2 Intel Xeon E5320 quad core 1.86 GHZ 8 Mo
8GB 667MHZ FBD
2 hdd 72Go hot plug 10Krpm RAID 0

Operating system

Windows HPC 2008 64 bits

GPUs

  • 4 GPUs
  • 2 machines dedicated to GPU computations
  • Each machine has two GPU GTX-280 SLI 1GB
  • 480 CUDA Cores
  • 2 TFlops

Cloud cluster:

Computing infrastructure slice one:

  • Dell PowerEdge M1000e blade
  • 47 Computing Nodes + 1 Frontal Node
  • CPU: Dual-processor quad-core 2.3GHz AMD Opteron 2356
  • System memory: 32GB (8X4GO DIMM DOUBLE RANGE)
  • Local Storage 2 x 73GB SAS 15000RPM
  • Connectivity: Gigabit ethernet

Computing infrastructure slice two:

  • Dell PowerEdge R900
  • 13 Computing Nodes
  • CPU: Quad-processor hexa-core 2.4GHz Intel Xeon E7450
  • System memory: 64GB (16X4GB)
  • Local Storage 2 x 146GB SAS 15000RPM
  • Connectivity: Infiniband + Gigabit ethernet

Computing infrastructure slice three:

  • Dell PowerEdge C6100
  • 46 Computing Nodes
  • CPU: Bi-processor hexa-core 2.93GHz Intel Xeon X5670
  • System memory: 96GB (32X4GB)
  • Local Storage 250Go
  • Connectivity: Infiniband + Gigabit ethernet

Operating system

  • Red Hat Enterprise Linux 5 for the frontal
  • Fedora Core 11 for the nodes
  • Kernel versions
    • 2.6.18-128.1.10 for the frontal
    • 2.6.29.4-167 for the nodes

Storage

  • server: Dell PowerEdge R610
  • bay: Dell PowerVault MD1000
  • 12TB of storage space, available in a RAID 6 configuration

available softs

The following softs are available on each of the computing nodes:

Software Version Location
blast 2.2.22 /opt/blast-2.2.22/
muscle 3.6 /usr/local/bin/muscle
shrimp 1.3.2 /opt/SHRiMP_1_3_2/
clustalW 2.0.12 /usr/local/bin/clustalw2
Mister Bayes 3.1.2 /usr/local/bin/mb
hmmer 3.0 /opt/hmmer-3.0/
openmpi 1.4.2 /opt/openMpi/
mpich2 1.1 /opt/mpich2/
gromacs 3.3.3 /usr/local/gromacs3.3.3/
InterProScan 4.6 /opt/iprscan/
CADP 2009-c /store/softs/CADP/

Any required library and soft can be installed on the nodes on your demand.